deepTools — анализ NGS-данных для биоинформатики

★ 7.0 · data

deeptools is a Claude Code skill that brings the deepTools NGS analysis toolkit into Claude workflows, covering BAM-to-bigWig conversion, quality control (fingerprint, correlation, PCA), and heatmap or profile generation around genomic features for ChIP-seq, RNA-seq, and ATAC-seq experiments. The skill ships with a file-validation script, a workflow generator for common analysis pipelines, a normalization reference covering RPGC, CPM, RPKM, and BPM methods, and a table of effective genome sizes for human, mouse, zebrafish, Drosophila, and C. elegans assemblies. Installation targets deepTools 3.5.6 via uv for reproducible command-line workflows, with conda/bioconda recommended for HPC environments. It is designed for bioinformaticians who need to compare replicates, visualize signal enrichment around TSS or peak regions, and produce coverage tracks for genome browsers.