DNAnexus — геномные воркфлоу в облаке

★ 7.0 · integration

dnanexus-integration is a Claude Code skill that builds, runs, and operates reproducible genomics workloads on the DNAnexus cloud platform using the dx CLI, dxpy, dxCompiler, and Nextflow. It covers file transfers for genomic formats (FASTQ, BAM, VCF), app and applet development with dxapp.json, job execution and monitoring via dx run and dx watch, and workflow import for WDL and CWL pipelines through dxCompiler 2.17.0 — all verified against dxpy==0.410.0. A built-in operating contract enforces read-only preflight checks and requires explicit confirmation before billable launches, deletions, permission changes, or data egress, and strictly prohibits exposing API tokens or DX_SECURITY_CONTEXT. Designed for bioinformaticians and data engineers who need to automate large-scale genomic pipelines, handle PHI data under organizational policies, or orchestrate cloud-native analyses on DNAnexus.