ETE Toolkit — анализ филогенетических деревьев

★ 7.0 · data

etetoolkit is a Claude Code skill that enables analysis, manipulation, comparison, annotation, and visualization of phylogenetic and hierarchical trees using ETE 4.4.0. It supports Newick/Nexus I/O, topology editing, Robinson-Foulds distance calculations, subtree pattern matching via TreePattern, gene-tree evolutionary event detection and reconciliation via PhyloTree, and querying NCBI or GTDB taxonomy databases. Rendering options include SmartView for interactive exploration and static PNG export, or the optional Qt treeview for PNG, PDF, and SVG output. The skill is intended for phylogenomics workflows — orthology and paralogy inference, topology comparison, tree annotation — applied to already-inferred trees; it does not replace sequence aligners like MAFFT or inference tools like IQ-TREE 2, which should be run first.