AlphaFold protein structure analysis and pocket detection

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alphafold_structure_pipeline gives Claude Code end-to-end analysis of AlphaFold protein structures: it downloads a predicted structure by UniProt ID, identifies binding pockets with fpocket, extracts the amino acid sequence from the PDB file, and computes basic structural statistics. The skill combines 4 tools across 3 MCP servers — download_alphafold_structure and calculate_pdb_basic_info from DrugSDA-Tool, run_fpocket from DrugSDA-Model, and extract_pdb_sequence from VenusFactory. It is designed for computational biology and structural bioinformatics workflows where researchers need to rapidly characterize protein binding sites or prepare structures for downstream tasks such as molecular docking.